Triple Helix Displacement Assayand this allowed the rate of translocation to be determined (Firman & Szczelkun, 2000). The EcoR124I enzyme used in these studies was able to translocate DNA in a bi-directional, highly processive manner at ~400 bp s-1 (Figure 5).
Firman &
Szczelkun (2000) were subsequently able to demonstrate that the R1-complex
was also able to translocate DNA in a unidirectional manner.
Although not as processive as the holoenzyme, the R1-complex
is still able to translocate at a comparable rate to the holoenzyme, but
does not cut the DNA when translocation is blocked (Firman, unpublished
observations). Instead, the
enzyme appears to reset when translocation is halted and then begin the
process again. It is also able
to perform this re-setting process at the end of a linear DNA molecule (see
video).
moving objects attached to the end of the DNA. Figure 5
Triple Helix Displacement Assay - A radiolabelled triple-helix forming
oligonucleotide (TFO) binds at a specific site on the DNA.
The EcoR124I enzyme binds at a distal site and translocates DNA
displacing the TFO. The time
taken to displace the TFO allows determination of the rate of translocation
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