Unlike other restriction enzymes, Type I R-M enzymes cut their target DNA at
random sites and the site of cleavage can be up to 20 kbp from the target
recognition sequence.
This distal
cleavage is accomplished through a process of DNA translocation, in which the
target DNA is moved through the enzyme complex until cleavage occurs (
Figure
2).
Studier
& Bandyopadhyay (1988) proposed a model for this cleavage that
depended upon collision between two translocating enzymes for DNA cleavage (
Figure
3).
This model was revised
slightly by Szczelkun
et
al. (
1996,
1997) who suggested that anything that is capable of
blocking translocation (including lack of DNA on circular molecules) will
produce cleavage.
However, very
few DNA-binding molecules are able to block translocation and only Holliday
structures, or another translocating Type I R-M enzyme, have this effect (
Janscak
et al., 1999).