DNA Cleavage
Unlike other restriction enzymes, Type I R-M enzymes cut their target DNA at
random sites and the site of cleavage can be up to 20 kbp from the target
recognition sequence. This distal
cleavage is accomplished through a process of DNA translocation, in which the
target DNA is moved through the enzyme complex until cleavage occurs (Figure
2).
Studier
& Bandyopadhyay (1988) proposed a model for this cleavage that
depended upon collision between two translocating enzymes for DNA cleavage (Figure
3). This model was revised
slightly by Szczelkun et
al. (1996,
1997) who suggested that anything that is capable of
blocking translocation (including lack of DNA on circular molecules) will
produce cleavage. However, very
few DNA-binding molecules are able to block translocation and only Holliday
structures, or another translocating Type I R-M enzyme, have this effect (Janscak
et al., 1999).
Methylation sites on the EcoR124I recognition site: * Figure 2Prior to DNA cleavage the type I R-M enzyme translocates DNA.Figure 3
DNA cleavage is activated when translocation is blocked
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