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Type I Restriction-Modification Enzymes

Type I R-M enzymes are unusual in that the holoenzyme is multifunctional and carries out both restriction and modification activities.  Therefore, it is critical to the correct function of Type I R-M enzymes that these two opposing functions are carefully controlled (Firman et al., 2000).  Type I enzymes are able to ‘read’ the methylation status at their target recognition sequence (Yuan et al., 1975) and if the site is fully methylated (both strands methylated) then the enzyme dissociates from the site (Figure 1a).  If the site is hemi-methylated then the enzyme adopts its methylation mode and methylates the DNA at the unmethylated site (Figure 1b).  However, if the DNA is unmethylated, on both strands, then the R-M enzyme undergoes a conformational change that switches the enzyme to restriction mode and the DNA is cleaved (Figure 1c, 2 & 3).

The R-M enzyme reads methylation status using a base-flipping mechanism during which the base is moved out of the DNA helix into the protein.  The enzyme must read the methylation of two bases and communicate this information.  Only when both adenines are UN-METHYLATED does a conformational change take place and the enzyme switches to endonuclease-mode.

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© University of Portsmouth
Author Dr Keith Firman,
Page last updated September 28, 2008