Type I Restriction-Modification Enzymes
Type I R-M enzymes are unusual in that the holoenzyme is multifunctional and
carries out both restriction and modification activities.
Therefore, it is critical to the correct function of Type I R-M enzymes
that these two opposing functions are carefully controlled (Firman
et al., 2000). Type I
enzymes are able to ‘read’ the methylation status at their target
recognition sequence (Yuan et al., 1975) and if the site is fully
methylated (both strands methylated) then the enzyme dissociates from the site
(Figure 1a). If
the site is hemi-methylated then the enzyme adopts its methylation mode and
methylates the DNA at the unmethylated site (Figure 1b).
However, if the DNA is unmethylated, on both strands, then the R-M
enzyme undergoes a conformational change that switches the enzyme to
restriction mode and the DNA is cleaved (Figure 1c,
2
& 3).
The R-M enzyme reads methylation status using a base-flipping mechanism during
which the base is moved out of the DNA helix into the protein.
The enzyme must read the methylation of two bases and communicate this
information. Only when both
adenines are UN-METHYLATED does a conformational change take place and the
enzyme switches to endonuclease-mode.
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